su: ignoring --preserve-environment, it's mutually exclusive with --login Attaching package: ‘bs4Dash’ The following objects are masked from ‘package:shiny’: actionButton, column, insertTab, tabsetPanel The following object is masked from ‘package:graphics’: box Loading required package: Matrix Loaded glmnet 4.1-7 Attaching package: ‘dplyr’ The following objects are masked from ‘package:data.table’: between, first, last The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Attaching package: ‘shinyWidgets’ The following object is masked from ‘package:bs4Dash’: progressBar Attaching package: ‘shinyBS’ The following objects are masked from ‘package:bs4Dash’: addPopover, addTooltip, closeAlert, createAlert, removePopover, removeTooltip Attaching package: ‘DT’ The following objects are masked from ‘package:shiny’: dataTableOutput, renderDataTable Attaching package: ‘openxlsx’ The following objects are masked from ‘package:xlsx’: createWorkbook, loadWorkbook, read.xlsx, saveWorkbook, write.xlsx Listening on http://127.0.0.1:45739 Check feature format in `input.cov`... Num of total feat: 113 Finish estimating coefficients. Warning: Error in $: $ operator is invalid for atomic vectors 105: isolate 104: exprFunc [/srv/shiny-server/KOMAP/app.R#911] 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$komap 1: runApp Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': $ operator is invalid for atomic vectors 187: as.matrix 186: KOMAP.auc 185: [/srv/shiny-server/KOMAP/app.R#903] 183: .func 180: contextFunc 179: env$runWith 172: ctx$run 171: self$.updateValue 169: out_plot 168: renderPlot [/srv/shiny-server/KOMAP/app.R#948] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$score 1: runApp